Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs72659670 chr1:36236750 G/C 1.34E-13 508 21.23 29.17 3.02 KM Plot
HNSC rs72659671 chr1:36237762 C/T 6.81E-14 510 21.23 32.67 3.02 KM Plot
HNSC rs72659673 chr1:36242004 G/A 6.81E-14 510 21.23 32.67 3.02 KM Plot
HNSC rs72659674 chr1:36243012 T/C 6.81E-14 510 21.23 32.67 3.02 KM Plot
HNSC rs72659676 chr1:36254032 C/T 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs72659677 chr1:36257353 A/T 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs72659678 chr1:36258190 T/C 7.78E-14 511 21.37 25.68 3.02 KM Plot
HNSC rs72659681 chr1:36265565 G/A 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs72659684 chr1:36274624 C/T 6.81E-14 510 21.23 32.67 3.02 KM Plot
HNSC rs72659686 chr1:36275767 G/T 6.81E-14 510 21.23 32.67 3.02 KM Plot
HNSC rs72659690 chr1:36291750 G/A 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs72659692 chr1:36292258 A/G 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs72659694 chr1:36301803 G/A 1.08E-13 510 21.37 27.43 3.02 KM Plot
HNSC rs72659695 chr1:36311143 T/G 6.04E-14 515 21.27 29.17 3.02 KM Plot
HNSC rs72659696 chr1:36313665 G/A 6.04E-14 515 21.27 29.17 3.02 KM Plot